If you’re looking for a dish that combines bold flavors, rich textures, and incredible health benefits, look no further than Natto, Kimchi & Tofu Gratin. This unique fusion dish brings together the best of Japanese and Korean cuisine, blending fermented natto, spicy kimchi, and creamy tofu, all baked together with cheese to create a comforting yet nutritious meal.
What is Natto, Kimchi & Tofu Gratin?
At its core, this gratin is a savory casserole-style dish where layers of soft tofu, fermented natto, and kimchi are baked with melted cheese to create a dish that is umami-rich, slightly tangy, and satisfyingly creamy. The fermented ingredients add a unique depth of flavor, making this a standout dish for those who enjoy bold tastes and probiotic-rich foods.
- Natto contributes a sticky, earthy texture with a deep umami flavor.
- Kimchi adds a spicy, tangy kick, balancing the dish with its acidity.
- Tofu acts as a neutral, creamy base that absorbs all the wonderful flavors.
- Cheese melts over the top, adding richness and a slight crispiness when baked.
Why Try This Fusion Dish?
This dish is perfect for anyone who loves healthy yet indulgent meals. It’s packed with protein, probiotics, and essential nutrients while still feeling like a comfort food. Some key reasons to try it include:
– Gut Health Benefits – Both natto and kimchi are rich in probiotics, promoting digestion and overall gut health.
– High in Protein & Nutrients – Tofu and natto provide a great source of plant-based protein, making this a nutritious option for vegetarians.
– Easy to Make & Customize – This gratin can be modified with different cheeses, extra seasonings, or additional vegetables to suit your taste.
– A Unique Take on Fusion Cuisine – Combines traditional Japanese and Korean flavors in a Western-style gratin format.
Understanding the Key Ingredients
The secret to the rich flavor and nutritional benefits of Natto, Kimchi & Tofu Gratin lies in its three core ingredients: natto, kimchi, and tofu. Each of these ingredients brings its unique taste, texture, and health benefits, creating a harmonious fusion dish. Let’s take a closer look at what makes them special.
1. Natto: The Fermented Superfood
What is Natto?
Natto is a traditional Japanese fermented soybean dish known for its sticky texture, strong aroma, and deep umami flavor. It’s made by fermenting soybeans with Bacillus subtilis, a probiotic bacteria that gives natto its distinctive characteristics.
Flavor & Texture
- Sticky and stringy when stirred
- Pungent aroma (often compared to strong cheese)
- Nutty, slightly bitter taste with a deep umami richness
Health Benefits of Natto
Rich in Probiotics – Supports gut health and digestion
High in Protein & Fiber – Ideal for vegetarians and those looking for a protein boost
Packed with Vitamin K2 – Essential for bone health and heart health
Contains Nattokinase – An enzyme that may help lower blood pressure and improve circulation
How Natto Enhances the Gratin
- Adds a savory, umami depth to the dish
- Its sticky texture blends well with the creamy tofu and melted cheese
- Provides a probiotic boost, making the dish gut-friendly
2. Kimchi: The Spicy, Tangy Kick
What is Kimchi?
Kimchi is a Korean fermented vegetable dish, typically made with napa cabbage and radish, seasoned with garlic, ginger, chili flakes (gochugaru), and fish sauce. It is tangy, spicy, and packed with umami flavors.
Flavor & Texture
- Spicy and tangy with a hint of sourness from fermentation
- Crunchy texture, adding contrast to the soft tofu
- Umami-rich, enhancing the depth of flavors in the gratin
Health Benefits of Kimchi
Probiotic-Rich – Supports digestion and gut health
High in Vitamins A & C – Strengthens the immune system
Contains Antioxidants – Helps fight inflammation
Aids Metabolism – Capsaicin from chili peppers may support weight loss
How Kimchi Enhances the Gratin
- Balances the rich, creamy texture of tofu and cheese with its spicy, tangy bite
- Adds fermented umami depth, making the dish more flavorful
- Provides a crunchy texture, creating contrast in every bite
3. Tofu: The Neutral, Creamy Base
What is Tofu?
Tofu is a soy-based protein made by coagulating soy milk and pressing the curds into solid blocks. It’s a staple in Japanese, Korean, and Chinese cuisine due to its mild taste and versatility.
Types of Tofu & Best Choice for Gratin
- Silken Tofu – Soft and creamy but too delicate for baking
- Firm Tofu – Holds shape well, ideal for gratins
- Extra-Firm Tofu – Great for texture but may not absorb flavors as well
Best choice for this dish: Firm tofu – It absorbs the flavors of kimchi, natto, and cheese while maintaining a soft texture.
Health Benefits of Tofu
High in Plant-Based Protein – A great meat substitute
Rich in Calcium & Iron – Supports bone and blood health
Low in Calories – Perfect for weight management
Heart-Healthy Isoflavones – May help lower cholesterol levels
How Tofu Enhances the Gratin
- Acts as a creamy, neutral base, balancing out strong flavors
- Absorbs the umami flavors of natto and kimchi
- Provides a protein-rich foundation for the dish
4. Cheese & Other Ingredients: Bringing It All Together
Cheese: The Creamy, Melty Topping
Cheese is an essential component of any gratin. It adds richness, creaminess, and a slightly crispy texture when baked.
Best Cheese Options for Natto, Kimchi & Tofu Gratin:
Mozzarella – Mild, gooey, and melts beautifully
Cheddar – Sharp and tangy, adding depth to the flavors
Parmesan – Savory and slightly nutty, great for a crispy topping
Other Essential Ingredients
Garlic & Onions – Enhance the overall umami and sweetness
Soy Sauce or Miso Paste – Adds saltiness and depth
Green Onions or Nori Strips – Used for garnishing and extra flavor
How to Make Natto, Kimchi & Tofu Gratin
Now that we’ve explored the key ingredients, let’s dive into the step-by-step process of making Natto, Kimchi & Tofu Gratin. This dish is easy to prepare, requiring minimal cooking skills, yet delivers an incredibly rich, umami-packed flavor.
Ingredients You’ll Need
Main Ingredients:
1 block of firm tofu (about 300g) – Drained and cubed
1 pack of natto (50g) – Stirred with included sauce and mustard
½ cup kimchi – Chopped into small pieces
½ cup shredded cheese (mozzarella, cheddar, or a mix)
1 tbsp miso paste – Adds extra depth of umami
1 tbsp soy sauce – Enhances flavor
1 tbsp sesame oil – For extra richness
½ tsp sugar – Balances the tanginess of kimchi
1 garlic clove, minced – Boosts umami
½ onion, finely chopped – Adds sweetness
1 green onion, chopped – For garnish
1 tsp sesame seeds – Optional, for garnish
½ tsp chili flakes (gochugaru) – Optional, for extra spice
Step 1: Preparing the Ingredients
1.1 Preparing the Tofu
Remove tofu from packaging and drain the excess water.
Wrap it in a clean kitchen towel and place a light weight (like a plate) on top for 10-15 minutes to remove excess moisture.
Once drained, cut into 1-inch cubes and set aside.
1.2 Preparing the Natto
Open the natto pack and stir it well with the included sauce and mustard.
Stirring helps activate the sticky texture and enhances the umami flavor.
1.3 Preparing the Kimchi
Chop kimchi into smaller pieces for even distribution in the gratin.
In a small bowl, mix kimchi with soy sauce, sugar, and sesame oil.
Let it sit for 5 minutes to allow the flavors to blend.
1.4 Preparing the Aromatics
Finely chop the garlic and onion.
Slice the green onion for garnish.
Step 2: Assembling the Gratin
2.1 Preheat the Oven
Preheat your oven to 375°F (190°C).
Lightly grease a baking dish with a bit of sesame oil to prevent sticking.
2.2 Layering the Ingredients
First Layer: Tofu – Spread the cubed tofu evenly in the baking dish.
Second Layer: Natto – Evenly distribute the stirred natto over the tofu.
Third Layer: Kimchi – Spread the seasoned kimchi evenly on top.
Fourth Layer: Cheese – Generously sprinkle shredded cheese over everything.
Step 3: Baking the Gratin
Place the dish in the preheated oven and bake for 15-20 minutes until the cheese is melted and bubbly.
If you prefer a crispier top, broil for an additional 2-3 minutes until the cheese is slightly browned.
Step 4: Final Touches & Serving Suggestions
4.1 Garnishing
Once baked, remove the dish from the oven and let it cool for a few minutes.
Sprinkle with chopped green onions and sesame seeds for extra flavor and texture.
4.2 Serving Suggestions
With Rice – Serve over steamed Japanese or Korean rice for a more filling meal.
As a Side Dish – Pair with miso soup, seaweed salad, or a light vegetable stir-fry.
With Bread – Enjoy with toasted sourdough or baguette for a fusion twist.
Tips & Variations
Pro Tips for the Best Gratin:
Press the tofu well to remove excess moisture—this helps absorb the flavors better.
Mix natto thoroughly to enhance its sticky texture before adding to the dish.
Choose aged kimchi for deeper flavor, or fresh kimchi for a milder taste.
Use high-quality cheese for the best melting texture and flavor.
Flavor Variations:
Spicy Version – Add extra gochugaru (Korean chili flakes) or a drizzle of sriracha.
Vegan Version – Replace cheese with vegan mozzarella or nutritional yeast.
Protein Boost – Add a soft-boiled egg on top before serving.
Crunchy Twist – Sprinkle panko breadcrumbs on top before baking for extra crunch.
Nutritional Benefits of Natto, Kimchi & Tofu Gratin
Natto, kimchi, and tofu gratin is not only a flavorful fusion dish but also a powerhouse of nutrition. Each ingredient contributes essential nutrients, making this dish a great choice for gut health, heart health, and overall well-being. Here’s a closer look at the health benefits of its key components.
1. Gut Health and Digestive Benefits
Both natto and kimchi are fermented foods, rich in probiotics that promote gut health.
- Natto contains Bacillus subtilis, a beneficial bacterium that helps improve digestion and supports a balanced gut microbiome.
- Kimchi is packed with lactic acid bacteria, which aid in digestion and help maintain a healthy gut flora.
- Probiotics from both ingredients can reduce bloating, improve nutrient absorption, and support immune function.
2. High-Protein, Plant-Based Meal
This gratin is an excellent source of plant-based protein, making it a great meal for vegetarians and those looking to increase their protein intake.
- Tofu provides complete protein, containing all nine essential amino acids.
- Natto is rich in protein, with around 6-8 grams per serving, contributing to muscle growth and maintenance.
- Cheese adds additional protein, though in a smaller amount compared to tofu and natto.
3. Heart Health Benefits
The ingredients in this dish contribute to cardiovascular health in multiple ways:
- Natto contains nattokinase, an enzyme that helps break down blood clots and may reduce the risk of heart disease.
- Tofu is rich in isoflavones, plant compounds that may help lower LDL (bad cholesterol) and improve blood vessel function.
- Kimchi has been linked to reduced cholesterol levels, thanks to its fiber content and probiotics.
4. Bone Health and Nutrient Density
This dish is high in calcium, vitamin K2, and essential minerals, which support strong bones and prevent osteoporosis.
- Natto is one of the best dietary sources of vitamin K2, which plays a key role in bone mineralization.
- Tofu provides calcium, essential for bone density and strength.
- Cheese also contributes calcium and phosphorus, further supporting bone health.
5. Antioxidant and Anti-Inflammatory Properties
Kimchi, in particular, is rich in antioxidants and anti-inflammatory compounds that support overall health.
- The garlic, ginger, and chili peppers used in kimchi contain bioactive compounds that help reduce inflammation.
- Fermented foods help regulate oxidative stress, which can slow down aging and prevent chronic diseases.

Variations & Customization Options
Natto, kimchi, and tofu gratin is highly versatile and can be adapted to different tastes and dietary preferences. Here are some variations and ways to customize the dish.
1. Vegan and Dairy-Free Version
For a fully plant-based version, replace cheese with:
- Vegan cheese alternatives such as cashew cheese or plant-based mozzarella.
- Nutritional yeast to add a cheesy, umami flavor.
- A tofu-based sauce blended with miso and lemon juice for creaminess.
2. Spicy and Extra Flavorful Version
If you enjoy bold, spicy flavors, try these adjustments:
- Add extra gochujang (Korean chili paste) or gochugaru (Korean chili flakes) to enhance the spice level.
- Drizzle with sriracha or chili oil before serving.
- Mix garlic and ginger into the tofu base for added depth of flavor.
3. Protein-Packed Version
To make the dish even more filling and protein-rich:
- Add eggs: Crack a raw egg on top before baking for a creamy texture.
- Include cooked chicken or shrimp for additional protein.
- Use tempeh or extra natto for an even greater plant-based protein boost.
4. Crunchy Topping Variation
For a crispy gratin topping:
- Sprinkle panko breadcrumbs over the cheese before baking.
- Drizzle a little sesame oil for extra richness.
- Add crushed nuts or seeds, such as sesame or sunflower seeds, for a nutty crunch.
5. Low-Carb and Keto-Friendly Version
This dish is naturally low in carbohydrates, but for an even more keto-friendly version:
- Reduce or eliminate kimchi if concerned about carb content from fermentation sugars.
- Use high-fat cheese like cheddar or gouda.
- Pair it with avocado or leafy greens instead of rice.
6. Different Cheese Options for Flavor Changes
The cheese selection can alter the flavor profile of the gratin:
- Cheddar: Adds sharpness and depth.
- Parmesan: Provides a nutty, umami boost.
- Gruyère: Offers a creamy and slightly sweet taste.
FAQs About Natto, Kimchi & Tofu Gratin
1. What does natto taste like in a gratin?
Natto has a strong umami flavor with earthy, nutty, and slightly bitter notes. When baked in the gratin with cheese and kimchi, the flavor mellows out, blending into the dish to create a rich and savory taste.
2. Can I use store-bought kimchi, or should I make my own?
You can use either store-bought or homemade kimchi. Store-bought kimchi is convenient, but homemade kimchi allows for adjusting spice levels and fermentation time to suit your taste. Aged kimchi tends to add a deeper, tangier flavor.
3. What type of tofu works best for this dish?
Firm tofu is the best choice because it holds its shape while absorbing flavors. Silken tofu can be used for a softer, creamier texture but may break apart more easily.
4. How long does this dish last in the fridge?
This gratin can be stored in an airtight container in the refrigerator for up to 3 days. Reheat in the oven or microwave before serving.
5. Is natto an acquired taste? How do I make it more palatable?
Yes, natto’s sticky texture and strong aroma can be challenging for first-timers. Mixing it with soy sauce, mustard, or cheese can help balance the taste. Baking it in a gratin also mellows the flavor and makes it more approachable.
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Natto, Kimchi & Tofu Gratin
Description
Natto, kimchi & tofu gratin is a savory, umami-rich baked dish that combines fermented natto, spicy kimchi, and soft tofu, all topped with melted cheese for a satisfying and nutritious meal. Inspired by Japanese and Korean cuisine, this dish is packed with probiotics, protein, and bold flavors, making it a unique fusion of comfort food and gut-healthy ingredients.
The fermented natto and kimchi bring deep umami flavors and tangy spice, while tofu adds a creamy, neutral base that absorbs all the seasonings. Cheese binds everything together, adding richness and a slightly crispy texture when baked. This gratin is perfect as a main dish or side dish, and it can be easily customized to fit different dietary preferences.
Ingredients
- 120 grams Tofu
- 1 Egg
- 1 pack Natto
- 1 +100 grams Kimchi
- 4 tbsp Finely chopped green onion (optional)
- 1 Melting chese
Instructions
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I used this tofu. 1 pack is 120 g.
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Mix the egg and tofu together with a whisk.
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Mix the natto with the sauce included in the pack and place in a heat-resistant dish with the kimchi. I usually separate this into 2 dishes, but you can just use 1!
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Top with the green onion and cover with Step 2.
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Top with as much cheese as you want and bake it in the toaster oven until browned.
Notes
Flavor Profile
- Umami-rich from natto and cheese
- Spicy and tangy from kimchi
- Creamy and mild from tofu
- Savory and slightly crispy from the baked cheese topping
Texture Contrast
- Soft and creamy tofu pairs well with the stringy texture of natto
- Crispy cheese topping adds a delightful crunch
- Kimchi brings a slight crunch and juiciness
Cooking Tips
✔ Use firm tofu for the best texture; press it beforehand to remove excess water.
✔ Stir the natto well before adding to the dish to enhance its stickiness and umami.
✔ Chop kimchi into small pieces to ensure even distribution of flavor.
✔ Use aged kimchi for a deeper, tangier taste, or fresh kimchi for a milder flavor.
✔ Broil the gratin for 2-3 minutes at the end for a golden, crispy cheese topping.
Ingredient Substitutions & Variations
- Vegan option: Use plant-based cheese and skip the natto (or use tempeh for a similar texture).
- Gluten-free: Ensure that the soy sauce and kimchi used are gluten-free.
- Extra spicy: Add gochujang or chili flakes for a bolder kick.
- Protein boost: Add a cracked egg on top before baking for extra creaminess.
- Crunchy topping: Sprinkle panko breadcrumbs before baking for added texture.
Serving Suggestions
- Serve with steamed rice for a hearty meal.
- Pair with miso soup or a fresh salad for a balanced dish.
- Enjoy with toasted sourdough or baguette for a fusion twist.
Storage & Reheating
- Storage: Store leftovers in an airtight container in the refrigerator for up to 3 days.
- Reheating: Reheat in the oven at 350°F (175°C) for 5-7 minutes or microwave for 1-2 minutes until warmed through.











